Setup

FastQC Summary

Summary statistics for all libraries
Filename Total Flagged As Poor Quality Sequence Length %GC
2.Illumina_indexing-35.CP-4937_R1.fastq.gz 168,626,953 0 151-151 42
2.Illumina_indexing-35.CP-4937_R2.fastq.gz 168,626,953 0 151-151 42
2.Illumina_indexing-5.CP-4935_R1.fastq.gz 169,607,956 0 151-151 42
2.Illumina_indexing-5.CP-4935_R2.fastq.gz 169,607,956 0 151-151 42
2.Illumina_indexing-6.CP-4936_R1.fastq.gz 176,877,838 0 151-151 42
2.Illumina_indexing-6.CP-4936_R2.fastq.gz 176,877,838 0 151-151 42

Read Totals

Library Sizes ranged between 168,626,953 and 176,877,838 reads.

Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.

FastQC Summary

Summary of FastQC flags for each parameter

Per Base Sequence Quality

Heatmap showing mean base qualities for each library

Per Sequence Quality Scores

Heatmap showing mean sequence qualities for each library

Per Base Sequence Content

Heatmap of summed base distributions along each read

Per Sequence GC Content

GC Content Heatmap normalised to theoretical GC content in the Hsapiens Transcriptome

GC Content Distributions for all reads showing theoretical GC content from the Hsapiens Transcriptome

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented Sequences

## No overrepresented sequences were detected by FastQC

Adapter Content

Universal Adapter Content

Kmer Content

Summary of Overrepresented Kmers in all files. A maximum of 30 Kmers are shown.
Filename Sequence Count PValue Obs/Exp_Max Max_Obs/Exp_Position
2.Illumina_indexing-6.CP-4936_R1 GATCAAT 295,745 0 7.363 1
2.Illumina_indexing-5.CP-4935_R1 GATCAAT 284,770 0 7.314 1
2.Illumina_indexing-35.CP-4937_R1 GATCAAT 282,995 0 7.515 1
2.Illumina_indexing-6.CP-4936_R1 GATCACA 594,690 0 7.089 1
2.Illumina_indexing-5.CP-4935_R1 GATCACA 575,550 0 7.188 1
2.Illumina_indexing-35.CP-4937_R1 GATCACA 567,455 0 6.91 1
2.Illumina_indexing-6.CP-4936_R2 GATCACA 482,280 0 8.162 1
2.Illumina_indexing-5.CP-4935_R2 GATCACA 465,995 0 8.686 1
2.Illumina_indexing-35.CP-4937_R2 GATCACA 461,595 0 8.168 1
2.Illumina_indexing-6.CP-4936_R1 GATCACT 296,810 0 7.253 1
2.Illumina_indexing-5.CP-4935_R1 GATCACT 288,165 0 7.367 1
2.Illumina_indexing-35.CP-4937_R1 GATCACT 283,965 0 6.879 1
2.Illumina_indexing-35.CP-4937_R2 GATCATA 354,675 0 6.221 1
2.Illumina_indexing-6.CP-4936_R1 GATCATC 324,945 0 6.196 1
2.Illumina_indexing-35.CP-4937_R1 GATCATC 311,405 0 6.315 1
2.Illumina_indexing-6.CP-4936_R2 GATCATC 287,555 0 6.496 1
2.Illumina_indexing-6.CP-4936_R1 GATCATG 446,125 0 6.788 1
2.Illumina_indexing-5.CP-4935_R1 GATCATG 427,285 0 6.474 1
2.Illumina_indexing-35.CP-4937_R1 GATCATG 424,975 0 6.692 1
2.Illumina_indexing-6.CP-4936_R2 GATCATG 397,070 0 7.064 1
2.Illumina_indexing-35.CP-4937_R2 GATCATG 379,360 0 6.683 1
2.Illumina_indexing-5.CP-4935_R2 GATCATG 378,290 0 6.845 1
2.Illumina_indexing-6.CP-4936_R2 GATCATT 371,925 0 6.54 1
2.Illumina_indexing-5.CP-4935_R2 GATCATT 359,230 0 6.451 1
2.Illumina_indexing-5.CP-4935_R1 GATCCAG 273,235 0 6.34 1
2.Illumina_indexing-6.CP-4936_R1 GATCCCT 311,125 0 6.647 1
2.Illumina_indexing-6.CP-4936_R2 GATCCCT 307,715 0 6.47 1
2.Illumina_indexing-5.CP-4935_R1 GATCCCT 301,295 0 6.358 1
2.Illumina_indexing-35.CP-4937_R1 GATCCCT 299,130 0 6.265 1
2.Illumina_indexing-35.CP-4937_R2 GATCCCT 292,200 0 6.325 1